PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19049
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 168aa    MW: 18365.5 Da    PI: 7.9452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19049genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-055274123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C+ CgksFs+   L  H ++H
  PEQU_19049 52 YHCSVCGKSFSSYQALGGHKSSH 74
                89************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-951121No hitNo description
SMARTSM003550.00565274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8035274IPR007087Zinc finger, C2H2
PfamPF139124.3E-135276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-45274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PROSITE profilePS501579.57799126IPR007087Zinc finger, C2H2
SMARTSM003550.9799121IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-1099122IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAAEALSSFF FFPLFSPSSS PSPNHPPPPQ PTAEDLPGWE GYVTNQPPHP LYHCSVCGKS  60
FSSYQALGGH KSSHRRASVT GGEERRWSSA GVSDGSGPHR CSLCFRRFPT GQALGGHKRL  120
HYWEPAPLPP PSYSDISVNG CGFDLNLPPE DEEPRSALLR KKIRVSDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593613.11e-120zinc finger protein ZAT6-like
TrEMBLA0A2I0V7T11e-36A0A2I0V7T1_9ASPA; Zinc finger protein AZF3
STRINGSb01g031900.14e-23(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.16e-24zinc finger of Arabidopsis thaliana 6