PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_19149

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 173aa MW: 19117.9 Da PI: 6.7349

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_19149	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.3	2.7e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++ap fp+e+p+kfa+vhk+FGasnv+k+l++lp ++r da+ slvyeA+ar+rdPvyG+vg i++lq+q++ql+ +la++++ PEQU_19149 6 PCASCKLLRRRCAKDCIFAPFFPSEDPHKFAIVHKVFGASNVSKMLQDLPFQQRADAVCSLVYEANARMRDPVYGCVGAISALQNQVQQLQMQLAMAHA 104 7**********************************************************************************************9997 PP DUF260 100 e 100 e PEQU_19149 105 E 105 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.209	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-42	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGNPPCASC KLLRRRCAKD CIFAPFFPSE DPHKFAIVHK VFGASNVSKM LQDLPFQQRA 60 DAVCSLVYEA NARMRDPVYG CVGAISALQN QVQQLQMQLA MAHAEVLCFQ MQSDSSSSSS 120 LLNQRLELDE GGDDKYSILL NNNMAMSGVP QSMNYSASSN VFPESLKRES LWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583202.1	1e-126	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	3e-67	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2I0VFJ8	5e-98	A0A2I0VFJ8_9ASPA; LOB domain-containing protein 12
STRING	XP_008804108.1	3e-79	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	8e-57	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]