PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_19252

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

CAMTA

Protein Properties

Length: 142aa MW: 16920.6 Da PI: 9.9273

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_19252	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	148.5	1.7e-46	40	141	2	103
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 l+e k+rwl+n+e++ iL+n++ +++e++++p sgsl+L+nr+++r+frkDG+ w+kkkdg+tv+E+he+LKvg+v++l+cyYah+e n++f+rr+y PEQU_19252 40 LQEaKSRWLNNSEVLFILQNHKGLPIENETPEKPISGSLFLFNRRVLRFFRKDGHIWRKKKDGRTVNEAHERLKVGNVDALNCYYAHGE-NRNFKRRIY 137 56669*********************************************************************************8.579** PP CG-1 100 wlLe 103 w+L+ PEQU_19252 138 WMLD 141 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	60.28	36	142	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.2E-51	39	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-40	42	141	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MALFWLVINC FFNDIRRNGI SCCCYALYVI GTSFDFNKLL QEAKSRWLNN SEVLFILQNH 60 KGLPIENETP EKPISGSLFL FNRRVLRFFR KDGHIWRKKK DGRTVNEAHE RLKVGNVDAL 120 NCYYAHGENR NFKRRIYWML DP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580493.1	4e-77	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	6e-50	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2I0X442	8e-59	A0A2I0X442_9ASPA; Calmodulin-binding transcription activator 4
STRING	XP_010250675.1	5e-53	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15485	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	9e-42	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]