PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19354
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7110.15 Da    PI: 5.7068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19354genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.64.9e-111272147
                HHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF 21 lKKAeELSvLCdaevaviifsstgkly 47
                +KKA+ELS+LC++e  +i fs+ gk +
  PEQU_19354  1 MKKASELSILCGVEFVIIAFSPAGKPF 27
                8**********************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.437133IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-12144IPR002100Transcription factor, MADS-box
PfamPF003191.8E-11129IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MKKASELSIL CGVEFVIIAF SPAGKPFSFG HPSVDSIAAR FLEQGRVVSD DAQQAADWQL  60
NLQRM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020697379.13e-29agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-14AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A455LA719e-33A0A455LA71_9ASPA; MADS-box protein-like protein
STRINGGSMUA_Achr8P07230_0019e-16(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-17AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]