PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19402
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ZF-HD
Protein Properties Length: 258aa    MW: 27695.9 Da    PI: 7.126
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19402genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-32863357
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                 +v Y+eClkNhAaslGgha+DGCgEfmps +++ +++++l+CaACgCHRnFHRr  
   PEQU_19402  8 EVLYRECLKNHAASLGGHALDGCGEFMPSLTANpADPTSLRCAACGCHRNFHRRIA 63
                 689**************************99999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.9E-28961IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-301161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2781162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-201158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.55E-14150211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-26151211IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-23153209IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
HVAHEADEVL YRECLKNHAA SLGGHALDGC GEFMPSLTAN PADPTSLRCA ACGCHRNFHR  60
RIAIRHRAAG AAASGDDSLE GEGERDGQED DGDDADVNDS RPRSPSPTPP TYFSSAPHML  120
LALSNGVRDG DSPAVARKSF AIPTPVVSLT PLRKRFRTKF SPEQKDRMLE LSERLGWRLQ  180
KRDEELVEKY CSEIGVGKGV FKVWMHNNKH HLFGHSSSRR GETMGGVSPP AAAAAALTGG  240
GAGVLKFDEN GNAMNGAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-221522101674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572796.10.0zinc-finger homeodomain protein 9-like
SwissprotQ6Z5282e-54ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A2I0WDX81e-123A0A2I0WDX8_9ASPA; Transcription factor HB29
STRINGXP_008784223.14e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-44homeobox protein 34