PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_19801

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Nin-like

Protein Properties

Length: 136aa MW: 16318.3 Da PI: 9.8509

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_19801	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.1	2.3e-25	6	54	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e+ le+++ yF++pi+ AA e++++lTvLK++CR++GI RWPhRk+ksl PEQU_19801 6 ELGLEEIRGYFNMPITRAAMEMNIGLTVLKKRCRELGITRWPHRKLKSL 54 7899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.507	1	76	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-21	7	54	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MMRSCELGLE EIRGYFNMPI TRAAMEMNIG LTVLKKRCRE LGITRWPHRK LKSLNTLITN 60 IQEIGKCSSD ENIKEELKSL EKHKRLMEEN PEIQLTEETK KLRQACFKAN YKRRVAMQRP 120 YLQPIQYIYI YIYIYL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020700072.1	2e-78	protein RKD2-like
Swissprot	Q9LVU8	5e-42	RKD4_ARATH; Protein RKD4
TrEMBL	A0A2I0VVL6	3e-64	A0A2I0VVL6_9ASPA; Protein RKD4
STRING	GSMUA_Achr4P08610_001	8e-52	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-44	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]