PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20420
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Whirly
Protein Properties Length: 159aa    MW: 17695.4 Da    PI: 6.9202
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20420genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly154.92.6e-48211722137
      Whirly  22 dsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgne 120
                 dsg+++++++G +l+++++a+++rkyd e+kq falsatev+ l++l++ esceffhdp++k+s eG+v+k+l + Pl dGsG+ +nlsv n ++k+ne
  PEQU_20420   2 DSGHQRVDKKGVILMKFIPAIGQRKYDSERKQYFALSATEVGCLISLGPGESCEFFHDPSMKSSLEGQVKKTLTISPLNDGSGYIFNLSVMNAVLKTNE 100
                 89************************************************************************************************* PP

      Whirly 121 sfsvPvskaefavlrsl 137
                 ++s+Pv+kaef v+r++
  PEQU_20420 101 RLSLPVTKAEFCVMRTA 117
                 **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085361.5E-452116IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.104.0E-522134IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.51E-522159IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDSGHQRVDK KGVILMKFIP AIGQRKYDSE RKQYFALSAT EVGCLISLGP GESCEFFHDP  60
SMKSSLEGQV KKTLTISPLN DGSGYIFNLS VMNAVLKTNE RLSLPVTKAE FCVMRTACGF  120
VLPLIMGWDR VIGPHVDRAD HGSSEQSVVK MDPDLEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-57113336168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-57113336168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-57113336168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-57113336168Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589120.11e-116single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
RefseqXP_020589122.11e-116single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
RefseqXP_020589124.11e-117single-stranded DNA-binding protein WHY2, mitochondrial isoform X3
SwissprotQ8VYF78e-60WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2H3YU052e-76A0A2H3YU05_PHODC; single-stranded DNA-binding protein WHY2, mitochondrial-like
STRINGXP_008803798.14e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-62WHIRLY 2