PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_20886

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 125aa MW: 14045.3 Da PI: 8.4723

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_20886	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53	4.5e-17	12	56	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+k r v fskRr g++KKA ELS+L +a++ ++fs gk PEQU_20886 12 KLIESKQSRLVCFSKRRSGLFKKARELSILSGAQIGALVFSYAGK 56 569**************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.521	4	58	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-22	4	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-20	5	63	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.36E-24	5	59	No hit	No description
PRINTS	PR00404	9.8E-15	6	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-19	14	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-15	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-15	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MAGGGRKKTE LKLIESKQSR LVCFSKRRSG LFKKARELSI LSGAQIGALV FSYAGKAFVS 60 DVAAMDSLLG LEKRCEIYDA VEVNEPPFWW DVPLQGMGSE ELLQLERRML EYGEKKMSGF 120 QQMDC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269\|PubMed:12724541, ECO:0000269\|PubMed:19139056, ECO:0000269\|PubMed:20551443}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269\|PubMed:15520273, ECO:0000269\|PubMed:15659097}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578255.1	1e-86	agamous-like MADS-box protein AGL31
Refseq	XP_020588145.1	1e-86	agamous-like MADS-box protein AGL31
Swissprot	Q9FPN7	2e-14	AGL31_ARATH; Agamous-like MADS-box protein AGL31
TrEMBL	A0A455LA50	2e-36	A0A455LA50_9ASPA; MADS-box protein-like protein
STRING	XP_008788342.1	5e-17	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	9e-17	AGAMOUS-like 31

Publications ? help Back to Top
Suter L,Rüegg M,Zemp N,Hennig L,Widmer A Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis. Plant Physiol., 2014. 166(4): p. 1928-42 [PMID:25339407]