PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_21273
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ZF-HD
Protein Properties Length: 248aa    MW: 28076.6 Da    PI: 8.8399
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_21273genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.43.4e-2852101357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  + +Y+eClkNhAas+Ggh++DGCgEfmp+e+     + lkCaAC CHR+FHR+ +
   PEQU_21273  52 TSKYRECLKNHAASIGGHVLDGCGEFMPNED-----DNLKCAACACHRSFHRKAS 101
                  679*************************944.....57**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.6E-2453100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-255499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-145499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.53855100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.2E-18161225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28162226IPR009057Homeodomain-like
TIGRFAMsTIGR015657.7E-28164220IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDFRSNHDDG PLISPVSLDH SPPPIRASAF SKPSSSSHNR FLLSPTSTRA ATSKYRECLK  60
NHAASIGGHV LDGCGEFMPN EDDNLKCAAC ACHRSFHRKA SANLPLILPP PPLHNYRHNQ  120
KHFGFQPSLS GGTTTDSSSE EQMDVADIAA TVAQPTRIVL AASRKRFRTT FTAEQKEKML  180
DFAERVGWRL QKQYENAIDE FCNEIGVRRK VFKVWMHNNK HSIRKQQLLI QNQPHEELEH  240
LSLQQREQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-241652221875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588662.10.0zinc-finger homeodomain protein 6-like
SwissprotB8AX533e-55ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A2I0W0041e-139A0A2I0W004_9ASPA; ZF-HD homeobox protein
STRINGXP_008782488.18e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-50homeobox protein 22