PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_21502
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 323aa    MW: 35652 Da    PI: 8.6484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_21502genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-1481125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE+++++da+ ++  + Wk+I + +g  +t  q++s+ qky
       PEQU_21502  81 RESWTEEEHKKFLDAILLYDRD-WKKIESFVG-SKTVIQIRSHAQKY 125
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1675131IPR009057Homeodomain-like
PROSITE profilePS5129415.98276130IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-878134IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-1779128IPR006447Myb domain, plants
SMARTSM007171.9E-1180128IPR001005SANT/Myb domain
PfamPF002491.8E-1181125IPR001005SANT/Myb domain
CDDcd001674.15E-983126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYSTPVISVG GGGGCGGAGG ADGFYRYHNY YFPQQSEEGT LMALTVPEMI VTTTIASLEE  60
ATTSDGAAKK IRKPYTITKS RESWTEEEHK KFLDAILLYD RDWKKIESFV GSKTVIQIRS  120
HAQKYFQKVQ KNGTTDHVPP PRPKRKASHP YPHKATKNAQ NVSQPTNSIQ SSSCLLEQGS  180
ALRSDSAIPL RNSASSGTLI SWDYSSSQPV NVSQTRKDYV GPSQAIMNHG SNSESSRSIY  240
KNCEAADHRN HVSSLHTMPD FGQVYSFIGC LIDPCMSGNL PKLKEMNPVD VETVLVLMRN  300
LSINLSSPDF EDQRRQLSSY GVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592467.10.0protein REVEILLE 6-like
SwissprotQ8H0W34e-89RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A221C7091e-112A0A221C709_9ASPA; Protein REVEILLE 3
STRINGXP_010276889.11e-111(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-91MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]