PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_21675
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 263aa    MW: 28392.2 Da    PI: 5.8496
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_21675genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.8e-18165199135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  PEQU_21675 165 CTHCSSEKTPQWRAGPLGPKTLCNACGVRFKSGRL 199
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-744234IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.517159195IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-16159209IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-14162223No hitNo description
Gene3DG3DSA:3.30.50.107.7E-14163197IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.42E-15164211No hitNo description
PfamPF003203.0E-16165199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MYGIPTAESL RVDDLLDFTS HEFFPSSSSS SSPTDDTAHL LPTSHEFSSS SAAIGFDSSF  60
PDDIYIPSEE AAELEWLSKF VEDSFSDTPY HYSFAADATM STENSNFPAS EISAHILTSR  120
KNRSPEISTS SSSSSSSSSS DVPKAKNNVI SKKKQGNNEA GARRCTHCSS EKTPQWRAGP  180
LGPKTLCNAC GVRFKSGRLV PEYRPAASPT FVLTQHSNSH RKVMELRRQK EFLILRGGVG  240
GTAGDGGGAG FSSAMLFEDY EVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587301.10.0GATA transcription factor 4-like
SwissprotO497438e-57GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A2I0XI111e-126A0A2I0XI11_9ASPA; GATA transcription factor
STRINGXP_008796101.12e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-55GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]