PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_21971

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 213aa MW: 24749.8 Da PI: 7.0025

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_21971	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.7e-19	57	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+ vGF+ rk+++++ + ++i+++++ C k+ ++++++ + ++ + ++a trtgC+a+++ + dg+w ++k+++ HnH+la PEQU_21971 57 HYCAYAHYVGFTERKDHTTYWAKFKKIKSKDYICGKSRHKRKSQLA-TTVKYRKADTRTGCQAMVHYAIDLDGNWTIEKFVESHNHPLA 144 6*************************************999999.8888999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-16	57	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MMELDFSLNE EFEHMDDEMN VNVFETEISR AETDCNDPIA RSFLNIVVRN EEEAYKHYCA 60 YAHYVGFTER KDHTTYWAKF KKIKSKDYIC GKSRHKRKSQ LATTVKYRKA DTRTGCQAMV 120 HYAIDLDGNW TIEKFVESHN HPLAESGDKH LLGSSRKISE LNANLLRSMT DSGIRAVDAF 180 NFLATEVGGV ENLKCTRQDA YNFIQRDKRS RIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020587208.1	1e-160	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1-related sequence 5