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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_22182 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 141aa MW: 16046.1 Da PI: 8.6489 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 40.6 | 8.7e-13 | 69 | 134 | 2 | 68 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68
Y++YA+ vGF+v k+++++ ++++i+++++ C k+g+++e++ + ++ + ++a+trt+C+ +++
PEQU_22182 69 HYCAYAHYVGFTVHKDHTTYWAKSKQIKSKDYICGKSGHKRESQLA-TTVKYKKANTRTSCQTMVHY 134
6*****************************************9999.899999***********986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.7E-10 | 69 | 135 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 141 aa Download sequence Send to blast |
MVVVTRTKGY AEDALTQRWA CRDYCGPNIR VCRGGSDLEL SGPETDCNDP IAHSFLNTII 60 RNEEEAYKHY CAYAHYVGFT VHKDHTTYWA KSKQIKSKDY ICGKSGHKRE SQLATTVKYK 120 KANTRTSCQT MVHYAIDLNG N |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020587208.1 | 5e-58 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_020597645.1 | 6e-58 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1212 | 5 | 87 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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