PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_22232

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 77aa MW: 8700 Da PI: 10.8372

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_22232	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.2	7e-10	5	41	54	90
FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +r trtgC a+++ + +g+w v+k+ + HnH+la PEQU_22232 5 RRGDTRTGCPAMIRYVVDVEGNWSVKKFIETHNHPLA 41 56789******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-8	5	41	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MVKYRRGDTR TGCPAMIRYV VDVEGNWSVK KFIETHNHPL AADGDKHLLR SSRKIGDVSA 60 QVLRSMTKSG IRTSDVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596366.1	4e-45	protein FAR1-RELATED SEQUENCE 5-like, partial
Refseq	XP_020597010.1	2e-45	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0X9W0	2e-24	A0A2I0X9W0_9ASPA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_008781698.1	2e-16	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-08	FAR1-related sequence 5