PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_22494

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 275aa MW: 31785.4 Da PI: 9.5988

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_22494	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.3e-55	7	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdee++++yL +k+++++++ +i+e++ +++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+++ kg PEQU_22494 7 LPPGFRFHPTDEEIITHYLLEKIKDQNFSP-IAISEANFNDCEPWDLPSKAKMGEKEWFFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGVI 104 79***********************988.78***********99999*************************************9 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy grap+g+k++Wvmheyrle PEQU_22494 105 VGMKKTLVFYMGRAPRGQKSNWVMHEYRLE 134 **************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-59	4	144	IPR003441	NAC domain
PROSITE profile	PS51005	53.283	7	161	IPR003441	NAC domain
Pfam	PF02365	4.0E-30	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDESLYLPPG FRFHPTDEEI ITHYLLEKIK DQNFSPIAIS EANFNDCEPW DLPSKAKMGE 60 KEWFFFCQKD RKYPTGMRTN RATESGYWKA TGKDKEIYKG KGVIVGMKKT LVFYMGRAPR 120 GQKSNWVMHE YRLEGKHQEH VHLYKSRQLE SRKVFCHDPS PVTLNHFLRL IPSLTILSQS 180 FSCRDPRPQP VFAEIVERIA PQDSSFSRSW SLKSLSSLTE VPPACHETLQ SPSYELTNFA 240 KAKLQTLLFL RPCVIRSNSK SPSSKSSRVA ELQTF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-48	5	133	15	142	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-48	5	133	15	142	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-48	5	133	15	142	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-48	5	133	15	142	NO APICAL MERISTEM PROTEIN
3swm_A	4e-48	5	133	18	145	NAC domain-containing protein 19
3swm_B	4e-48	5	133	18	145	NAC domain-containing protein 19
3swm_C	4e-48	5	133	18	145	NAC domain-containing protein 19
3swm_D	4e-48	5	133	18	145	NAC domain-containing protein 19
3swp_A	4e-48	5	133	18	145	NAC domain-containing protein 19
3swp_B	4e-48	5	133	18	145	NAC domain-containing protein 19
3swp_C	4e-48	5	133	18	145	NAC domain-containing protein 19
3swp_D	4e-48	5	133	18	145	NAC domain-containing protein 19
4dul_A	4e-48	5	133	15	142	NAC domain-containing protein 19
4dul_B	4e-48	5	133	15	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF831198	1e-127	JF831198.1 Dendrobium candidum NAC protein (NAC) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578928.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FK44	3e-76	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2I0VQS3	1e-99	A0A2I0VQS3_9ASPA; NAC domain-containing protein 100

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	5e-79	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]