PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23216
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 217aa    MW: 25191.9 Da    PI: 9.4561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23216genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.32.7e-3244146199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k ltpsdv+k++rlv+pk++ae++       g  e++  l++ede+g+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F + + ++ +l+
  PEQU_23216  44 FEKPLTPSDVGKLNRLVIPKQYAEKYfpldaeAG--EKGLLLSFEDENGKLWRFRYSYWTSSQSYVLTKGWSRFVKEKQLDAGDIVIFLRRRGNGDRLF 140
                 99*************************9996533..46779************************************************8766888899 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+ +r+
  PEQU_23216 141 VGCRRR 146
                 999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-4439155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-3140145IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-3042145No hitNo description
SMARTSM010194.4E-2544146IPR003340B3 DNA binding domain
PfamPF023621.7E-2944146IPR003340B3 DNA binding domain
PROSITE profilePS5086315.22744146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MPANHFVYQT QQAWIWDTTM ESYHRHQNLH LGEEIMNCEK EPMFEKPLTP SDVGKLNRLV  60
IPKQYAEKYF PLDAEAGEKG LLLSFEDENG KLWRFRYSYW TSSQSYVLTK GWSRFVKEKQ  120
LDAGDIVIFL RRRGNGDRLF VGCRRRGSGQ DSITAASAAQ SPAMQWNHQS PSMPSSSYLY  180
LNSIPEGRIQ SLLTIKKQFL CMFSYRVIKI GFVIFVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-49381462113B3 domain-containing transcription factor NGA1
5os9_B6e-49381462113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580393.11e-141B3 domain-containing protein Os11g0156000-like
SwissprotQ9FNI32e-56Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2I0VQD41e-119A0A2I0VQD4_9ASPA; B3 domain-containing protein
STRINGXP_008799673.17e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-58B3 family protein