PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23277
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 731aa    MW: 79698.8 Da    PI: 5.4984
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23277genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.3e-2263118156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  PEQU_23277  63 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSKRLNLDPRQVKFWFQNRRTQMK 118
                 688999***********************************************999 PP
2START151.38.4e-482504741205
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+a++++p+W        e +n +e+++ +++  +     + +ea r++++v  + + lv +++d + +W ++++    ka+t++ is
  PEQU_23277 250 ELALAAMDELVKLAQVDSPFWIPNIdgrgEVLNLEEYTRALPRCVApkpadFFSEATRDTAIVLIDGMILVDTFMDAN-RWAKMFPcvvaKAATIDIIS 347
                 5899********************9999999999999999977544999999****************9*********.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 sg      ga qlm+aelq+l+plvp R + f+R+++q+ +g+w++vdvSvd  ++    s s + +++lpSg+l++ ++ g+skvtw+eh+++++  +
  PEQU_23277 348 SGmggtrnGAFQLMQAELQVLTPLVPvRAVSFLRFCKQHAEGVWAVVDVSVDGIRESLAaSGSHMSCRRLPSGYLVQAMPSGYSKVTWIEHAEYDETAV 446
                 *****************************************************9998778999999********************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqce 205
                 h+l+r+ ++ g+  ga++w ++lqrq e
  PEQU_23277 447 HQLYRPPLRAGICLGARRWISALQRQSE 474
                 *************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-2250120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2253120IPR009057Homeodomain-like
PROSITE profilePS5007118.2260120IPR001356Homeobox domain
SMARTSM003895.8E-2161124IPR001356Homeobox domain
CDDcd000861.52E-2063120No hitNo description
PfamPF000461.3E-1963118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084838.693241478IPR002913START domain
SuperFamilySSF559612.88E-24245474No hitNo description
SMARTSM002342.2E-32250475IPR002913START domain
PfamPF018525.1E-39250474IPR002913START domain
CDDcd088755.77E-103256474No hitNo description
SuperFamilySSF559612.06E-14496696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
LGQQMNTAGQ GDMSRLGVFT GGVGDVEAIV KSREEENESR SGGSDNLEGG SGDDIDQENP  60
RKKKRYHRHT PQQIQELEAL FKECPHPDEK QRMELSKRLN LDPRQVKFWF QNRRTQMKTQ  120
IERHENSILR SENDKLRAEN LTIREAMRSP VCGSCGSPAM LGEVSLEEQQ LRIENARLKD  180
ELDRVCALAS RFLGRPMSAL SSPFSASPLE LGVGFTGLAA MVGGDYTAGS SMPQPPRAVL  240
AGSERSLLLE LALAAMDELV KLAQVDSPFW IPNIDGRGEV LNLEEYTRAL PRCVAPKPAD  300
FFSEATRDTA IVLIDGMILV DTFMDANRWA KMFPCVVAKA ATIDIISSGM GGTRNGAFQL  360
MQAELQVLTP LVPVRAVSFL RFCKQHAEGV WAVVDVSVDG IRESLAASGS HMSCRRLPSG  420
YLVQAMPSGY SKVTWIEHAE YDETAVHQLY RPPLRAGICL GARRWISALQ RQSEYLAIMS  480
ATSPPPSDNP AITVAGKRSM MRLAGRMTEN FCAGVCAWAE RKWRELRSAE VGEDMVRVMT  540
RQSVDDPGEP PGVVLSAATS VWLPMVSAQR LFEFLRDEQL RREWDILSNG GPMQEVAHIA  600
KGHDRGNSVS LLRATDANGN QKQEEESMLI LQETSTDAAG SLVVYAPVDA PAINLVMNGG  660
DSSYVALLPS GFSILPDGSG GSGNVGGSLL TVAFQILVST LSTAELTVQS VDTVKSLISC  720
TVLKIKSALT C
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573166.10.0homeobox-leucine zipper protein ROC6-like
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A2I0VKD90.0A0A2I0VKD9_9ASPA; Homeobox-leucine zipper protein HDG1
STRINGXP_008799528.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]