PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23367
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 211aa    MW: 24426.1 Da    PI: 10.1406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23367genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-057597123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C k F r  nL+ H r H
  PEQU_23367 75 FVCEICAKGFQRDQNLQLHRRGH 97
                89*******************88 PP
2zf-C2H213.20.00026154176123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +   s+ k H +t+
  PEQU_23367 154 WKCEKCSKKYAVYSDWKAHVKTC 176
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-67497No hitNo description
Gene3DG3DSA:3.30.160.604.1E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8037597IPR007087Zinc finger, C2H2
SMARTSM003550.17597IPR015880Zinc finger, C2H2-like
PfamPF121717.1E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-6149174No hitNo description
SMARTSM0035597154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MYPSATISNS TTITEEANVS PETRVHDHFN NLTLLFTPIS TQPKPKTKRS QPGNPDPDAE  60
VVALSPKSLL ATNRFVCEIC AKGFQRDQNL QLHRRGHNLP WRLRQRNNNG KEVIKKRVYV  120
CPEPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KKYAVYSDWK AHVKTCGTRE  180
YKCHCGTLFS RFVRFFFSFS FFNFNCIELI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21150201354Zinc finger protein JACKDAW
5b3h_F1e-21150201354Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571303.11e-140protein indeterminate-domain 7-like
RefseqXP_020594992.11e-142protein indeterminate-domain 7-like, partial
SwissprotQ8H1F51e-90IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2I0W4161e-122A0A2I0W416_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008813524.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-78indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]