PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23598
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 333aa    MW: 37750.4 Da    PI: 7.8226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23598genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-174592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+++vk +G g+W+++ + +g+ R++k+c++rw ++l
       PEQU_23598 45 KGPWTAAEDAILIEYVKTHGEGNWNAVQKNIGLQRCGKSCRLRWANHL 92
                     79******************************************9986 PP
2Myb_DNA-binding49.41e-1598141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l++ ++ qlG++ W++ a++++ gRt++++k++w++
       PEQU_23598  98 KGSFSPEEEALILYLHSQLGNK-WARMAAHLP-GRTDNEIKNYWNT 141
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2414092IPR017930Myb domain
SuperFamilySSF466892.66E-3042139IPR009057Homeodomain-like
SMARTSM007174.1E-154494IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-254699IPR009057Homeodomain-like
CDDcd001676.38E-134792No hitNo description
PfamPF139211.9E-1648107No hitNo description
PROSITE profilePS5129424.14693147IPR017930Myb domain
SMARTSM007172.1E-1597145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-25100146IPR009057Homeodomain-like
CDDcd001671.62E-11100141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTNLDSFNCT YDKKTAVDIK EEPGVVPPAK SSANAGPPEA SPLKKGPWTA AEDAILIEYV  60
KTHGEGNWNA VQKNIGLQRC GKSCRLRWAN HLRPNLKKGS FSPEEEALIL YLHSQLGNKW  120
ARMAAHLPGR TDNEIKNYWN TRIKRRQRAG LPLYPPNIQQ KVDGQNQRQE TFTNIQKHCL  180
AKNYNPHISP TMTTGYDNID TVNGNTNYIG NFNDNESPQQ LQSFYCPVKM EHSPTALLPP  240
YIENQNWLVP PPTTTLVDYN NIYHHNQFKG SQFPEKLYNQ DVLLENMPLS SVAAMEPPSP  300
RLPSTPNCNE SIMNCFYHMD NSNNSYNTSG ELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30431465107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592623.10.0transcription factor MYB48-like
TrEMBLA0A2I0VSY03e-79A0A2I0VSY0_9ASPA; Transcription factor GAMYB
STRINGGSMUA_Achr1P17150_0013e-72(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-70myb domain protein 101