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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_23889 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 212aa MW: 24856.4 Da PI: 8.6574 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 37 | 1.1e-11 | 15 | 89 | 2 | 87 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87
Y++Y +++GFsvrk++ + +++++i++++fvC + + +raetrtgC a+++ +++++w v+kl +e H
PEQU_23889 15 VYCAYTHHIGFSVRKDHATFWTNSRNIKTKDFVCGNATVKY-----------RRAETRTGCPAMIRYGVDEESNWTVKKLIEEFMH 89
7*********************************7765544...........46788************************99888 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.3E-9 | 15 | 90 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 212 aa Download sequence Send to blast |
LLETLVHNEK EAYEVYCAYT HHIGFSVRKD HATFWTNSRN IKTKDFVCGN ATVKYRRAET 60 RTGCPAMIRY GVDEESNWTV KKLIEEFMHG SCGLQLHAST NNENEFFEFF IKNKNLDDHM 120 FNTTWVVHFD SSSLDIKCSC RKFKMMGLLC SLSLRVLNFL HIKKIPVKYL LLRWSENAKK 180 MENAKRDVYN SSGYMHLQQS QSSHDIKGDL FF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020590422.1 | 2e-63 | LOW QUALITY PROTEIN: nuclear pore complex protein NUP98A-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G06250.1 | 4e-11 | FAR1-related sequence 7 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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