PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23940
Common NameMYB4
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 211aa    MW: 23805.2 Da    PI: 9.3879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23940genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+  ++ +G g W++ ++  g+ R++k+c++rw +yl
       PEQU_23940 14 KGAWTKEEDERLISHIRSHGEGAWRSLPQAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.92e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++
       PEQU_23940  67 RGNFTHDEDDLIINLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.67961IPR017930Myb domain
SMARTSM007176.4E-121363IPR001005SANT/Myb domain
SuperFamilySSF466893.33E-2913108IPR009057Homeodomain-like
PfamPF002493.5E-141461IPR001005SANT/Myb domain
CDDcd001674.11E-91661No hitNo description
PROSITE profilePS5129427.362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2765116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002499.1E-1667111IPR001005SANT/Myb domain
CDDcd001678.12E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLISHIR SHGEGAWRSL PQAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF THDEDDLIIN LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG  120
IDPATHRPIS AVDFSGGGGG AAAEKRSSRG KGDRVKVARL PRCPDLNLEL CISAPLEEMQ  180
HDLLVEESNC GGEFLRLGSS FLIDYRRLEM K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7694690.0KF769469.1 Phalaenopsis equestris MYB transcription factor 4 (MYB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585535.11e-154myb-related protein Zm38-like
SwissprotP200252e-92MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A096ZX651e-152A0A096ZX65_PHAEQ; MYB transcription factor 4
STRINGGLYMA11G11450.14e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-87myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]