PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24366
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 604aa    MW: 67567.8 Da    PI: 7.8721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24366genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06933526
                --SGGGGTS...--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartG...tCkyGdrCkFaHg 26
                +C+  a++G    C++G++C+F+H+
  PEQU_24366  9 ICSEVAKSGrteDCRFGGSCRFNHD 33
                599999999999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.319935IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.164873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.702.9E-70247490IPR013785Aldolase-type TIM barrel
CDDcd028012.10E-88251486No hitNo description
SuperFamilySSF513956.72E-62251563No hitNo description
PfamPF012071.6E-49254521IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360335353IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
QEQKSAVHIC SEVAKSGRTE DCRFGGSCRF NHDINAFLAQ KPADLEGVCP FATFEGLCPY  60
GITCRFLNTH QKQTLENRDI SKKNSEVNIL KKDLQKLLWK NKFSFTKADS QLKALGLKGN  120
KSIVSKAGNG QLDTNQENSI VLNDLCADEV DDTRSMNANE MSQSPGKAIE TKCSSDSSDF  180
YESRRPKKVK SHVDGNIEAT YVGKCEREND LPNNSLPYCC EGASSIKMCS KSDLSIKPLA  240
REKKLVDFRG KLYLAPLTTV GNLPFRRICK NFGAEITCGE MAVCTNLLQG QASEWALLRR  300
HSSEDFFGVQ ICGAYPDSIA RTIELIDEQC EVDFIDINMG CPIDLIVNKG AGSSLLTKPM  360
RMKSIIQVAS GTAKGPVTIK VRTGFFEGRN RIDSLISDIY DWGTTAITVH GRSRQQRYSK  420
LADWNYIYQC TNNAPTGLQV LGNGDIFSYC DYNKHMADCP ELSTCMIARG ALIKPWIFTE  480
IKEQRHWDIS SGERLNIFRD FVNFGLEHWG SDTKGVETTR HFLLEWLSYT HRYIPVGLLD  540
IIPQRLNWRP PSYSGRDDLE TLMAFGSAAA LGRRISEMLL GKVPEGFTFA PKHKSNAYDK  600
AENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A4e-2524849527266tRNA-dihydrouridine synthase B
6ei9_B4e-2524849527266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992400.0KM399240.1 Iris japonica FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587460.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2I0VRH40.0A0A2I0VRH4_9ASPA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
STRINGXP_008781781.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]