PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24587
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 187aa    MW: 21288.4 Da    PI: 9.5074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24587genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21.1e-1662116256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Lee F+++++++ + +  LAk+l+L  rq+ vWFqNrRa+ k
  PEQU_24587  62 RKKLRLSKEQSAFLEESFKEQSTLNPKLKFVLAKQLNLRPRQIEVWFQNRRARTK 116
                 678899***********************************************98 PP
2HD-ZIP_I/II120.49.1e-3962151191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LEesF+e+++L+p+ K  la++L+l+prq++vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr ++
   PEQU_24587  62 RKKLRLSKEQSAFLEESFKEQSTLNPKLKFVLAKQLNLRPRQIEVWFQNRRARTKLKQMEMDCEFLKRRCETLREENRRLHKEVAELR-AI 151
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1646112IPR009057Homeodomain-like
SuperFamilySSF466891.24E-1753119IPR009057Homeodomain-like
PROSITE profilePS5007116.53658118IPR001356Homeobox domain
SMARTSM003893.7E-1460122IPR001356Homeobox domain
CDDcd000861.38E-1262119No hitNo description
PfamPF000463.0E-1462116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
SMARTSM003406.4E-16118161IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-10118151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
ICVKIGNLEP PVIEEVEEQA AVSSSQIRGV CSLHVNFAGG VGVAAERGSS RGSDEEENDR  60
GRKKLRLSKE QSAFLEESFK EQSTLNPKLK FVLAKQLNLR PRQIEVWFQN RRARTKLKQM  120
EMDCEFLKRR CETLREENRR LHKEVAELRA IKSFHIQIPP TTLSICSSCE RVSPPPTSPP  180
QPPQTPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965RGRKKLR
2110118RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599458.11e-128homeobox-leucine zipper protein HOX27-like
SwissprotA2YW038e-63HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD08e-63HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2I0XAN14e-94A0A2I0XAN1_9ASPA; Homeobox-leucine zipper protein HOX11
STRINGAquca_009_00127.13e-66(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-56homeobox from Arabidopsis thaliana