PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_24707

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 228aa MW: 24746.4 Da PI: 4.6015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_24707	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00051	185	215	20	55
HHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + Lr+++P K + +++L +A++Y+ksLq PEQU_24707 185 VSMLRRIIPGG------KgKDTVSVLDEAIQYLKSLQ 215 56678888876......335679*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.953	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-5	177	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-6	177	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.29E-4	178	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNTLAPNPTI NFSEPEATKR KRFLVFDYSG DQTSLVFSSV ACPFEGLNPT LPLGSVANTN 60 ASNSHISEEN KVHEDTEEID ALLYSDSEHI YDDEESSTGH SPLDMEKEDI ASSYLPAKRR 120 RVDSTEIDTL LMDTASSAVA LSPHFILEDG SNDLGFNGCI GDGKDKTGQG SRSRCNKRDS 180 IHATVSMLRR IIPGGKGKDT VSVLDEAIQY LKSLQLQAKA AGANSFTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	121	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593237.1	1e-167	transcription factor bHLH143-like
Refseq	XP_020593238.1	1e-167	transcription factor bHLH143-like
TrEMBL	A0A2I0VW79	1e-112	A0A2I0VW79_9ASPA; Transcription factor bHLH145
STRING	XP_008795184.1	3e-47	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10031	18	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	4e-10	bHLH family protein