PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_24779

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 158aa MW: 18184.8 Da PI: 9.8826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_24779	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C+k F r nL+ H r H PEQU_24779 20 YICDVCHKGFQRDQNLQLHRRGH 42 89*******************88 PP
2	zf-C2H2	15.6	4.5e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +Cg+++ +s+ k H +++ PEQU_24779 96 WKCDKCGRRYAVQSDWKAHFKSC 118 58*****************9987 PP
3	zf-C2H2	13.3	0.00025	126	144	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cg++Fsrk+++++H + PEQU_24779 126 GCGTVFSRKDSFVTHRAFC 144 6**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.8E-7	17	42	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.45E-7	18	42	No hit	No description
SMART	SM00355	0.04	20	42	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.679	20	42	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2
SMART	SM00355	65	61	91	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-5	84	117	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.45E-7	91	116	No hit	No description
SMART	SM00355	96	96	116	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
DPDAEVIALS PRTLVATKRY ICDVCHKGFQ RDQNLQLHRR GHNLPWKLKQ KSSSESKKKV 60 YVCPEVTCAH HDPKRALGDL TGIKKHYSRK HGDKKWKCDK CGRRYAVQSD WKAHFKSCGT 120 KDYRCGCGTV FSRKDSFVTH RAFCEALAHE ESYMANNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-29	92	158	3	69	Zinc finger protein JACKDAW
5b3h_F	4e-29	92	158	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593103.1	1e-116	protein indeterminate-domain 4, chloroplastic-like
Swissprot	Q8GYC1	3e-92	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A2I0WWA2	1e-96	A0A2I0WWA2_9ASPA; Zinc finger protein MAGPIE
STRING	XP_008797147.1	2e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-87	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]