PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24832
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 131aa    MW: 14807.8 Da    PI: 9.866
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24832genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1361.1e-422398277
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                C v+gC adls+++eyh+rhkvCevhsk+pvv+v g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+ 
  PEQU_24832 23 CSVDGCVADLSKCREYHKRHKVCEVHSKTPVVVVGGREQRFCQQCSRFHSLAEFDEGKRSCRKRLDGHNRRRRKPP 98
                *************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-342084IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.3422097IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-392198IPR004333Transcription factor, SBP-box
PfamPF031107.1E-322396IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVTSSGASRR ARVPNSTGYI ASCSVDGCVA DLSKCREYHK RHKVCEVHSK TPVVVVGGRE  60
QRFCQQCSRF HSLAEFDEGK RSCRKRLDGH NRRRRKPPQL DAQSSGNSLT NPHGFLLYLK  120
LEYELSIILT D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3023961184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17996KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589900.12e-78squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_020589901.18e-79squamosa promoter-binding-like protein 16 isoform X2
SwissprotQ0J0K13e-43SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
SwissprotQ2R3Y14e-44SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A2H4H2B17e-66A0A2H4H2B1_9ASPA; Squamosa promoter-binding-like protein 1 (Fragment)
STRINGXP_008806431.12e-51(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-43SBP family protein