PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25207
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27292.1 Da    PI: 8.3758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25207genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-18112166256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rq+ vWFqNrRa+ k
  PEQU_25207 112 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQTLAKQLNLRARQIEVWFQNRRARTK 166
                 788899***********************************************98 PP
2HD-ZIP_I/II119.81.4e-38112200190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l++rq++vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL ke +eL+ +
   PEQU_25207 112 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQTLAKQLNLRARQIEVWFQNRRARTKLKQTEVDCEFLRRCCETLTEENRRLLKELQELK-A 200
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.6003.6E-481112IPR012897Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain
PROSITE profilePS5007117.265108168IPR001356Homeobox domain
SMARTSM003891.1E-14110172IPR001356Homeobox domain
SuperFamilySSF466898.98E-18111177IPR009057Homeodomain-like
PfamPF000462.3E-15112166IPR001356Homeobox domain
CDDcd000867.74E-14113169No hitNo description
Gene3DG3DSA:1.10.10.609.3E-17113166IPR009057Homeodomain-like
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PfamPF021836.3E-11168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-21168214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006813Biological Processpotassium ion transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005249Molecular Functionvoltage-gated potassium channel activity
GO:0030955Molecular Functionpotassium ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MERGDSCDTD LSLGLGLPTI IRQQQLNPPP PPLEPSLTLS LSEEIYGSTT TPKEARLSSP  60
HSTISSFSTS NIKKEKLDVG GEETEVERGS ASRARERERE REEEDEASAA ARKKLRLTKE  120
QSALLEDRFK EHSTLNPKQK QTLAKQLNLR ARQIEVWFQN RRARTKLKQT EVDCEFLRRC  180
CETLTEENRR LLKELQELKA IKFSTPPPPL FMQLPAATLM VCPSCERGTP SSSFLGRSLL  240
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572334.11e-172homeobox-leucine zipper protein HAT22-like
SwissprotP466046e-71HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2I0WRV51e-121A0A2I0WRV5_9ASPA; Homeobox-leucine zipper protein HOX19
STRINGGSMUA_Achr8P26480_0011e-80(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-60HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]