PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25415
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 82aa    MW: 9210.23 Da    PI: 8.9569
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25415genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.64.9e-121158347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +l+ +a + +G +   +Wk++a+ +g g++++++k+++ ++
       PEQU_25415 11 TWTPKQNKLFERALAVYGEEtpeRWKKVAKAVGGGKSAEEVKLHYENL 58
                     7*****************99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.612763IPR017884SANT domain
SMARTSM007175.6E-10861IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-131067IPR009057Homeodomain-like
CDDcd001671.94E-71159No hitNo description
PfamPF002494.1E-101158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-61159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGSRGTGDSS TWTPKQNKLF ERALAVYGEE TPERWKKVAK AVGGGKSAEE VKLHYENLVE  60
DLRHIESGNV PLPNYNRDSN HK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-24375473RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573085.13e-55protein RADIALIS-like 3
RefseqXP_020573086.13e-55protein RADIALIS-like 3
SwissprotQ1A1732e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H3YB932e-32A0A2H3YB93_PHODC; protein RADIALIS-like 3
STRINGXP_008795931.14e-33(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-22RAD-like 6