PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25615
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 81aa    MW: 9313.66 Da    PI: 10.882
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25615genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.4e-19438135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C++C + kTp+WR gp g+k+LCnaCG+++++ +l
  PEQU_25615  4 CTHCASDKTPQWRTGPLGPKSLCNACGVRFKSGRL 38
                *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.477134IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-15262No hitNo description
SMARTSM004011.4E-12248IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-14236IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-11350No hitNo description
PfamPF003202.9E-17438IPR000679Zinc finger, GATA-type
PROSITE patternPS003440429IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MRRCTHCASD KTPQWRTGPL GPKSLCNACG VRFKSGRLVP EYRPAASPTF VLTQHSNSHR  60
KVLELRRQRE NAAIYNEYNV R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589285.16e-55GATA transcription factor 4-like
SwissprotO497417e-44GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A078FX084e-42A0A078FX08_BRANA; GATA transcription factor
TrEMBLA0A0D3BQ034e-42A0A0D3BQ03_BRAOL; GATA transcription factor
TrEMBLA0A397Z6P83e-42A0A397Z6P8_BRACM; GATA transcription factor
TrEMBLM4CL003e-42M4CL00_BRARP; GATA transcription factor
STRINGBra004886.1-P6e-43(Brassica rapa)
STRINGBo4g024310.16e-43(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.13e-46GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]