PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25946
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 453aa    MW: 50259.7 Da    PI: 6.1977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25946genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.9e-139484481374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+l +a+a+L+++s lasp+gd+mqR+a+yfteALa+rl+rs++++y+al+p +++      + aa++lf +++P+l++s+l+ N
  PEQU_25946  48 LIHLLLNCANHVAAGNLDQANAFLEHISLLASPEGDTMQRIASYFTEALARRLLRSWPGVYRALNPIAAD---ICAKSAARRLFLDLCPFLRLSFLVSN 143
                 689****************************************************************998...99999********************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+ege+ vHi+D++ s ++QW+aLlq La Rpegpp+lRiT+vg+    +k+ l +t++ L+k Ae+l++pf+fn+ v+++l++l++e+Lrvk+
  PEQU_25946 144 QAILEAMEGEKVVHIVDLGGSDPAQWLALLQGLAGRPEGPPHLRITAVGE----HKDLLLQTASVLSKEAEKLDIPFQFNA-VVSKLDALSVESLRVKT 237
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll...................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                 gEa+a+++vlqlh+ll                                   + s++++ + +++L  ++slsPk++vv+eqe++hn++s+ erf+eal+
  PEQU_25946 238 GEAVAISSVLQLHSLLasdditaarklfpfqsagtlvdlldkdhgsdssssAFSLPTSAKMETFLASLWSLSPKIMVVTEQESNHNGSSLNERFVEALN 336
                 **********************************************99987666666668899************************************ PP

        GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                 +y+alfd+le++lpr+s er +vE++l+g+ei+n+ aceg er+erhe+lekW +r+e+aGF+ vpls++ + qa+++l+ ++ dgyrv+ee+g++ ++
  PEQU_25946 337 FYAALFDCLESTLPRQSAERLNVEKKLFGEEIKNIMACEGLERKERHEKLEKWIMRFEMAGFGRVPLSYYGMLQARRMLQSFGCDGYRVKEENGCFQFC 435
                 *************************************************************************************************** PP

        GRAS 362 WkdrpLvsvSaWr 374
                 W+dr+L+svSaW+
  PEQU_25946 436 WQDRALFSVSAWK 448
                 ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.9322428IPR005202Transcription factor GRAS
PfamPF035143.1E-13648448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSGVAEEVSS SVTSSPLLSF MSISPTALGS PYSPWLRELK SDERGLFLIH LLLNCANHVA  60
AGNLDQANAF LEHISLLASP EGDTMQRIAS YFTEALARRL LRSWPGVYRA LNPIAADICA  120
KSAARRLFLD LCPFLRLSFL VSNQAILEAM EGEKVVHIVD LGGSDPAQWL ALLQGLAGRP  180
EGPPHLRITA VGEHKDLLLQ TASVLSKEAE KLDIPFQFNA VVSKLDALSV ESLRVKTGEA  240
VAISSVLQLH SLLASDDITA ARKLFPFQSA GTLVDLLDKD HGSDSSSSAF SLPTSAKMET  300
FLASLWSLSP KIMVVTEQES NHNGSSLNER FVEALNFYAA LFDCLESTLP RQSAERLNVE  360
KKLFGEEIKN IMACEGLERK ERHEKLEKWI MRFEMAGFGR VPLSYYGMLQ ARRMLQSFGC  420
DGYRVKEENG CFQFCWQDRA LFSVSAWKFR RFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-70314502381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571279.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I0X5N80.0A0A2I0X5N8_9ASPA; Scarecrow-like protein 3
STRINGGSMUA_Achr8P09690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-162scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]