PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_26150

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 184aa MW: 20416.8 Da PI: 6.8945

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_26150	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	136.4	3.1e-42	31	172	3	150
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lLl+cAe +++ d+ +a+++++ ls +p+gd++ R+++ ft AL+ l+ lppse++ ++ +++ +++++P+l+f+hltaNq PEQU_26150 31 YLLLRCAELIHHADHPAARRAISLLSAAtTTPYGDSTDRITHQFTLALSLLLNP-----LTHLPPSESN----NSAQSSYLSLYQITPFLRFAHLTANQ 120 58**********************99899******************9.....5567777776....3344577789************ PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150 aIl+av+g++r+Hi+Dfd s+GlQWp++lqa+a+R+ ++pps+RiTg gs PEQU_26150 121 AILDAVDGHHRIHILDFDTSHGLQWPPFLQAIADRSdpANPPSIRITGTGSD 172 *******************************97778*******983 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.131	3	184	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-39	31	172	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MLSSIKSHEE EGDEESHRRN RRHHDSPSPV YLLLRCAELI HHADHPAARR AISLLSAATT 60 TPYGDSTDRI THQFTLALSL LLNPLTHLPP SESNNSAQSS YLSLYQITPF LRFAHLTANQ 120 AILDAVDGHH RIHILDFDTS HGLQWPPFLQ AIADRSDPAN PPSIRITGTG SDPSTLTSLS 180 SRRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-21	12	182	1	177	Protein SCARECROW
5b3h_D	5e-21	12	182	1	177	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583340.1	1e-130	protein MONOCULM 1-like
Swissprot	Q84MM9	2e-37	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A2I0WBM1	8e-73	A0A2I0WBM1_9ASPA; Scarecrow-like protein 18
STRING	XP_008806184.1	1e-59	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	4e-22	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]