PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_26527
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 161aa    MW: 18502.4 Da    PI: 10.2099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_26527genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.66.6e-42151451128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk.. 95 
                 lppGfrFhPtdeelvv+yL++k+ + +l++  +i+e+d+ k++PwdLp ++ + + ++++f+ +++k++++ g+ + r tk gyWk  gk+k+vl++  
  PEQU_26527  15 LPPGFRFHPTDEELVVQYLRRKAFSFPLPA-AIIPEIDLGKLNPWDLPLNLGGfGGDKYFFYLRESKSQKKkGRVSYRETKLGYWKPLGKEKPVLASsq 112
                 79***************************9.88***************666552444555555555555542556678*****************9877 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++elvglk++L+fy+g++p+g+ktdW+mhey+l
  PEQU_26527 113 GNELVGLKQVLAFYRGKSPHGSKTDWIMHEYSL 145
                 7888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-459150IPR003441NAC domain
PROSITE profilePS5100544.65915161IPR003441NAC domain
PfamPF023654.2E-2316145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
EMERNEFMKH GLVRLPPGFR FHPTDEELVV QYLRRKAFSF PLPAAIIPEI DLGKLNPWDL  60
PLNLGGFGGD KYFFYLRESK SQKKKGRVSY RETKLGYWKP LGKEKPVLAS SQGNELVGLK  120
QVLAFYRGKS PHGSKTDWIM HEYSLPNKEL LKSSAQVSAN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3441454140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578085.11e-111NAC domain-containing protein 83-like
SwissprotQ9FY932e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2I0WHH15e-93A0A2I0WHH1_9ASPA; NAC transcription factor NAM-2
STRINGXP_008813225.12e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-55NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]