PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27189
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 182aa    MW: 20324.3 Da    PI: 9.3758
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27189genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.22.6e-14143177133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C+nCg +   Tp +Rrgp g+++LCnaCGl+++ k
  PEQU_27189 143 CQNCGISAklTPAMRRGPGGPRSLCNACGLMWANK 177
                 *****9999***********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.5E-10439IPR010399Tify domain
PROSITE profilePS5132014.809439IPR010399Tify domain
PfamPF062001.6E-13738IPR010399Tify domain
PfamPF062038.2E-1673114IPR010402CCT domain
PROSITE profilePS5101713.07673115IPR010402CCT domain
SuperFamilySSF577168.08E-9136178No hitNo description
SMARTSM004016.3E-4137181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-12141177IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440143170IPR000679Zinc finger, GATA-type
CDDcd002021.63E-9143177No hitNo description
PfamPF003206.5E-12143177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQLVGSNPNQ LTLLFQGEVY VFDSVTPEKV QAVLLLLGGC EVPTSISSSA FACNQDDRGM  60
DDILRRTNIP AKRLASLIRF REKRKERCFD KKIRYDVRKE VALRMKRRKG QFAGKANPED  120
ESSPSLSCDP PSSQDDTPRE TNCQNCGISA KLTPAMRRGP GGPRSLCNAC GLMWANKVMT  180
YY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577334.11e-129GATA transcription factor 18-like isoform X2
SwissprotA2XKR71e-82GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A2I0WF451e-118A0A2I0WF45_9ASPA; GATA transcription factor 24
STRINGXP_008794051.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-60ZIM-like 1