PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27639
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 104aa    MW: 12354.2 Da    PI: 10.9122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27639genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-072069147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     r ++T  E e lv+ v++lG+g+W+ +        k Rt  ++k++w ++
       PEQU_27639 20 RRPFTVSEVETLVKTVEKLGTGRWRDVKIQSFddaKYRTYVDLKDKWKTL 69
                     679***********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3991574IPR017930Myb domain
SMARTSM007177.5E-51972IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-102070IPR009057Homeodomain-like
SuperFamilySSF466895.69E-1621101IPR009057Homeodomain-like
CDDcd116603.29E-142171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
LSVVPADKLK RSELVQRRIR RPFTVSEVET LVKTVEKLGT GRWRDVKIQS FDDAKYRTYV  60
DLKDKWKTLV HTARISPHHR RGEPVPQELL DRVLRAHAYW SHQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-5281045101Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590402.13e-67telomere repeat-binding protein 2-like
RefseqXP_020590403.13e-67telomere repeat-binding protein 2-like
RefseqXP_020590404.13e-67telomere repeat-binding protein 2-like
RefseqXP_020590405.13e-67telomere repeat-binding protein 2-like
SwissprotQ6R0E32e-53TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2I0WK669e-56A0A2I0WK66_9ASPA; Telomere repeat-binding protein 5
STRINGXP_008784600.17e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.19e-56TRF-like 2