PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_27835

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YC

Protein Properties

Length: 230aa MW: 25333.3 Da PI: 4.5126

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_27835	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45	2.3e-14	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ad+dv +i+ +P+l+ska elf+ +l r++ + ++ +tl+ s ++++v+ fdfl+d+v + PEQU_27835 1 MQADDDVGKIALPVPILVSKALELFLQDLCDRAYEVTTQKGAKTLNSSHLKQCVKMYSAFDFLTDVVNK 69 899***************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.59E-20	1	71	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.5E-19	1	68	IPR009072	Histone-fold
Pfam	PF00808	2.2E-13	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MQADDDVGKI ALPVPILVSK ALELFLQDLC DRAYEVTTQK GAKTLNSSHL KQCVKMYSAF 60 DFLTDVVNKV PNLGGIESVG DEKGITRRRK VVHDGDVLTE DLRSAKMAMR SANVSPRGRA 120 RGRGRGRGRP PLNRTIEKGS SYMKFEDEIE LSPEHDDPEG VNADTEVTER AKESKDPTDT 180 TITNTADLCP TKDCSAWPLS DGVGSLGIEP ANMVNLNMQM DEDEDYDNED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-15	1	56	21	76	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	127	RARGRGRGRG
2	118	128	RARGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580310.1	1e-170	dr1-associated corepressor-like isoform X1
Refseq	XP_020580311.1	1e-170	dr1-associated corepressor-like isoform X2
TrEMBL	A0A2I0W1E1	9e-83	A0A2I0W1E1_9ASPA; Nuclear transcription factor Y subunit C-3
STRING	GSMUA_Achr10P07370_001	1e-71	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-37	nuclear factor Y, subunit C11