PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_27978

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 100aa MW: 11505.3 Da PI: 8.5009

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_27978	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.9	1.4e-07	4	40	54	90
FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +ra t +gC +++ + +g+w v+k+ + HnH+la PEQU_27978 4 KRADTMIGCPTMIRYFVDLEGNWSVKKFIESHNHPLA 40 78999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-5	3	40	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MRFKRADTMI GCPTMIRYFV DLEGNWSVKK FIESHNHPLA EDGDKHLLRS SRKMCDVSVD 60 ILISMTKSRI ITSDAFRFLA TEVGGVENLD CTKRDAYAFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573853.1	8e-57	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020581377.1	7e-57	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VPA5	1e-29	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-07	FAR1 family protein