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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_28230 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 219aa MW: 25119.4 Da PI: 7.4098 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 30.1 | 1.6e-09 | 40 | 81 | 49 | 90 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
++ + +a+t+tgC+a+++ + dg+w ++k+++ HnH+la
PEQU_28230 40 TTVKYIKANTQTGCQAMVRCVIDLDGNWTIKKFVESHNHPLA 81
555667899*******************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.1E-7 | 40 | 81 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 219 aa Download sequence Send to blast |
MLVSPYARTT QLTGLNSSKL SFRIIFVKNH VIKEESQLAT TVKYIKANTQ TGCQAMVRCV 60 IDLDGNWTIK KFVESHNHPL AESGDKHLLR SSRRISELNA NLLRSMTGSG IRAADAFNFL 120 ATKVGGIENL ECTRQDAYNF IQRDKRSRIE QGDVNSLLQL FMERQNEDSM FAWDFQSDEE 180 GRLTSFFWSD RSCRLDYDCF GDVIIFDTNL KDNLTIPRQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020597645.1 | 1e-110 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2I0XAY7 | 1e-58 | A0A2I0XAY7_9ASPA; Protein FAR1-RELATED SEQUENCE 5 | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1212 | 5 | 87 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 7e-23 | FAR1-related sequence 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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