PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28311
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 180aa    MW: 20596.9 Da    PI: 10.7059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28311genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-102291947
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47
                     +G+ +W++Ia+++  gR++k+c++rw++ 
       PEQU_28311  2 YGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 29
                     8999**********.***********996 PP
2Myb_DNA-binding56.65.9e-183679146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
       PEQU_28311 36 RSAFTEEEEEKLMAAHRLYGNK-WAMIARVFP-GRTDNAVKNHWHV 79
                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.363130IPR017930Myb domain
SMARTSM0071712132IPR001005SANT/Myb domain
PfamPF002495.6E-9129IPR001005SANT/Myb domain
CDDcd001671.98E-7228No hitNo description
Gene3DG3DSA:1.10.10.601.3E-18237IPR009057Homeodomain-like
SuperFamilySSF466891.37E-26988IPR009057Homeodomain-like
PROSITE profilePS5129426.6833185IPR017930Myb domain
SMARTSM007178.8E-153583IPR001005SANT/Myb domain
PfamPF002491.1E-143678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-213884IPR009057Homeodomain-like
CDDcd001677.39E-133878No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRSAFT EEEEEKLMAA HRLYGNKWAM  60
IARVFPGRTD NAVKNHWHVI MARKYREQSS AHRRRKLNQA MHLRLEEITA SSRPLPPFHF  120
PSSIVGSSPP HLIPNGGMAS LRQKPSDCII SGMLTFFSCN ISSLLFLPVL YPSAITLILP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2928425107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571646.11e-110transcriptional activator Myb-like
RefseqXP_020598600.11e-110transcriptional activator Myb-like
SwissprotQ9SEZ44e-60MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2I0WGI24e-85A0A2I0WGI2_9ASPA; Transcription factor MYB44
STRINGXP_008802623.12e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.16e-63myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]