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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_28401 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 286aa MW: 32193 Da PI: 9.9978 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.1 | 0.0003 | 236 | 255 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk+F ++ L++H++++
PEQU_28401 236 CSQCGKPF-KPEKLHSHMKSC 255
********.**********98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF06136 | 2.6E-13 | 1 | 270 | IPR010369 | Protein of unknown function DUF966 |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 286 aa Download sequence Send to blast |
RSYKNGHIWQ DLTDNDLITP FSDNEYILKG SLIPSPHNKA VEQFFPFHER KTATKKQDAE 60 EEEEEEEIAD VPILKTPYET LHIEANVSPK PPPRGDEESP IRPDTSSSSS SVLKSERTEE 120 MKEGDKEKSC GKLVAIKKNG SQVDRSNSKG RGEAQPRRRA ADVLRNLLRC RLVDTKDTVK 180 RESRGMNGSL SRKSYQTSSS SNERKNWEKR GSNGRSRQMT EKTTSATFKP SKEPNCSQCG 240 KPFKPEKLHS HMKSCIALSE RGKSSSLNKE TQTGTKRPSK VTVTVL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020585175.1 | 0.0 | uncharacterized protein LOC110027893, partial | ||||
| TrEMBL | A0A2I0VN52 | 1e-101 | A0A2I0VN52_9ASPA; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP10794 | 12 | 13 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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