PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28508
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WOX
Protein Properties Length: 173aa    MW: 19711.5 Da    PI: 9.6983
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28508genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.74.1e-1388144657
                 S--HHHHHHHHHHHHH.SSS--HHHHH....HHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   6 tftkeqleeLeelFek.nrypsaeere....eLAkklgLterqVkvWFqNrRakekk 57 
                 + +++   +Le+ F + n + s+++++    eL+k+++++e++V++WFqNrRa+ k+
  PEQU_28508  88 NTNTHVALILESIFDQgNGTSSKQKIKevifELTKRVKISETNVYNWFQNRRARAKR 144
                 678889999******8888888887772223688999******************97 PP
2Wus_type_Homeobox582.3e-19941461365
  Wus_type_Homeobox  13 ikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          iLe+++++G  t +k++i+++  eL++  ki+++NV++WFQNr+aR ++kq
         PEQU_28508  94 ALILESIFDQGNGTSSKQKIKEVIFELTKRVKISETNVYNWFQNRRARAKRKQ 146
                        469************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-482149IPR001356Homeobox domain
SuperFamilySSF466898.55E-1186147IPR009057Homeodomain-like
PfamPF000461.1E-1088144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-1095143IPR009057Homeodomain-like
CDDcd000861.69E-796146No hitNo description
PROSITE profilePS5007111.48397145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEWVKVPTSF NDGEDRRRGV LYVKVMTDEQ MEILRCQIAV YAIICEQLVK MHRAVSAQLD  60
SLAGMRFGSL YCDPVMTSTT HKLASKLNTN THVALILESI FDQGNGTSSK QKIKEVIFEL  120
TKRVKISETN VYNWFQNRRA RAKRKQSSVA TSITESEADT QSESRNDKKA KTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARAKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576547.11e-88WUSCHEL-related homeobox 8-like
SwissprotQ5QMM36e-61WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2I0WGR73e-74A0A2I0WGR7_9ASPA; WUSCHEL-related homeobox 8
STRINGXP_008781303.17e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.14e-50WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]