PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_29038

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 120aa MW: 13836.3 Da PI: 10.6905

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_29038	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.6	8.6e-13	30	94	25	90
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++i++++fvC k g+++e k + e + +ra tr gC a+++ +++g+ ++k+ + HnH+la PEQU_29038 30 SRNIKTKDFVCGKTGFKKELKIT-EIVKYRRAGTRSGCPAMIRYAVDEKGNLTIKKFIEYHNHSLA 94 567999***********9988.889999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-10	30	94	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MKYIVFTLII LDLVFVRSTL RFGLTPDPNS RNIKTKDFVC GKTGFKKELK ITEIVKYRRA 60 GTRSGCPAMI RYAVDEKGNL TIKKFIEYHN HSLANPSDKH MLRSNRKISE VNVDVLRSMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020590386.1	4e-46	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2I0VPA5	2e-28	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I0VS86	7e-29	A0A2I0VS86_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-11	FAR1-related sequence 5