PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29151
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 313aa    MW: 35216.7 Da    PI: 7.8656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29151genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.54.9e-5771351129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdee++++yL +kv+++   ++ +i evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ +g l
  PEQU_29151   7 LPPGFRFHPTDEEIITHYLSPKVANHGAFTAIAIGEVDLNKCEPWDLPSKAKLGEKEWYFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEIYRGRGVL 105
                 79************************9777688***************99999********************************************** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 +g+kktLvfy+grapkg+kt+Wvmhe+rle
  PEQU_29151 106 IGMKKTLVFYRGRAPKGVKTNWVMHEFRLE 135
                 ***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-634160IPR003441NAC domain
PROSITE profilePS5100559.4777159IPR003441NAC domain
PfamPF023652.0E-298134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDESLDLPPG FRFHPTDEEI ITHYLSPKVA NHGAFTAIAI GEVDLNKCEP WDLPSKAKLG  60
EKEWYFFCQR DRKYPTGMRT NRATDSGYWK ATGKDKEIYR GRGVLIGMKK TLVFYRGRAP  120
KGVKTNWVMH EFRLEGKSYF SNLPKSAKDE WVVSRVFHKN NPAQKKTPMF GGVVSNLARM  180
NSFTDELTDS PNLPPLTDTP YFNSDMVDVD SFDVKAIMAS SAPLNNYYSM NNFPYSSNSL  240
PSSSYQQQPI PYFSEAKGQQ YCKAEQFSNQ SMVSQDTGDR NTEISSVISK IDMASCASYG  300
GGAVMDLASM WGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-54516515171NO APICAL MERISTEM PROTEIN
1ut4_B3e-54516515171NO APICAL MERISTEM PROTEIN
1ut7_A3e-54516515171NO APICAL MERISTEM PROTEIN
1ut7_B3e-54516515171NO APICAL MERISTEM PROTEIN
3swm_A3e-54516518174NAC domain-containing protein 19
3swm_B3e-54516518174NAC domain-containing protein 19
3swm_C3e-54516518174NAC domain-containing protein 19
3swm_D3e-54516518174NAC domain-containing protein 19
3swp_A3e-54516518174NAC domain-containing protein 19
3swp_B3e-54516518174NAC domain-containing protein 19
3swp_C3e-54516518174NAC domain-containing protein 19
3swp_D3e-54516518174NAC domain-containing protein 19
4dul_A3e-54516515171NAC domain-containing protein 19
4dul_B3e-54516515171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576379.10.0NAC domain-containing protein 92-like
SwissprotQ9FK441e-103NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A345BIJ70.0A0A345BIJ7_9ASPA; NAC transcription factor
STRINGXP_008782760.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-106Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]