PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29298
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 241aa    MW: 28175.8 Da    PI: 7.2222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-082140625
                -SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                C+f+++tG C++G+rC++ H
  PEQU_29298 21 CPFHLKTGACRFGSRCSRVH 40
                ******************99 PP
2zf-CCCH28.62.4e-09150177126
                 --S---SGGGGTS..--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                 +k ++C  ++++   tC++G+ C+F H+
  PEQU_29298 150 WKVAICGEYMKSRlkTCSHGSACNFVHC 177
                 899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6711543IPR000571Zinc finger, CCCH-type
SMARTSM003561.41642IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-62040IPR000571Zinc finger, CCCH-type
PRINTSPR018481.6E-392140IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549283.02E-1535151IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.6E-394060IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3301.1E-2346145IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.89347147IPR000504RNA recognition motif domain
PRINTSPR018481.6E-397691IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.6E-39104126IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.6E-39131155IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.812149179IPR000571Zinc finger, CCCH-type
SMARTSM003560.18149178IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7150177IPR000571Zinc finger, CCCH-type
PRINTSPR018481.6E-39169181IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MIDSVAQQIP NFGTEQDKAH CPFHLKTGAC RFGSRCSRVH FYPDKSCTLL IKNMYNGPGL  60
TCEQDEGLEY TDEEVERSYE EFYEDVHTEF LKFGEIINFK VCKNSSYHLR GNLYVHYKLL  120
ESAILAFNTM NARYYAGKQI ICDFVGVTRW KVAICGEYMK SRLKTCSHGS ACNFVHCFRN  180
PGGDYEWADW DNPPPRYWIK RMIFLFGTSA ESGYDKELES QDHRRHTEPK RVWKSNNDRF  240
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-36121769167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577019.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ9SY741e-129C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A2I0X2Q71e-159A0A2I0X2Q7_9ASPA; Zinc finger CCCH domain-containing protein 5
STRINGXP_010252404.11e-139(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92961317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-123C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]