PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29475
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 224aa    MW: 25473.9 Da    PI: 7.4329
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29475genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde l  +++ +G+g +W + +++ g++R++k+c++rw++yl
       PEQU_29475 14 RGPWSPEEDEALRSYIQNHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding43.95.4e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd+l+  +  + G++ W+ Ia+++  gRt++++k++w++
       PEQU_29475  69 GCFTKEEDDLIFTLYSKIGSR-WSVIASKLH-GRTDNDVKNHWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.594962IPR017930Myb domain
SuperFamilySSF466894.3E-2811109IPR009057Homeodomain-like
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
PfamPF002491.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241569IPR009057Homeodomain-like
CDDcd001673.12E-81662No hitNo description
PROSITE profilePS5129422.05263117IPR017930Myb domain
SMARTSM007177.2E-1367115IPR001005SANT/Myb domain
PfamPF002491.4E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2370117IPR009057Homeodomain-like
CDDcd001672.44E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDEALRSYIQ NHGSGGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPNIKHGC FTKEEDDLIF TLYSKIGSRW SVIASKLHGR TDNDVKNHWN TKLKKRLMEA  120
QAIMSDGHYG SSAPPLMDSQ PLINCVPVLS TDEIKSESFN GSLEQSLDLR FPRQNPNHLE  180
LDFGSITDLL LCSSSYEETV DTIWADAFEE FKLRELSQSV TYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
1h8a_C2e-231411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593402.11e-168transcription factor RAX2-like
SwissprotQ9SJL71e-67RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A2I0X6S21e-123A0A2I0X6S2_9ASPA; Transcription factor RAX3
STRINGSb03g003120.17e-72(Sorghum bicolor)
STRINGGSMUA_Achr4P01050_0014e-72(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-70MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]