PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_29622

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 93aa MW: 10574.3 Da PI: 10.2277

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_29622	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.1	2.7e-08	4	40	54	90
FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++a trtgC+a+++ + + +g+w ++k+++ nH+la PEQU_29622 4 RKADTRTGCQAMVRYNIDLEGNWTIKKIVESQNHPLA 40 6789*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-6	4	40	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MKYRKADTRT GCQAMVRYNI DLEGNWTIKK IVESQNHPLA KAGDKHILCS SRKINGLNVD 60 LLISMTQSWI RAAHAFNFIA LKVRGVENLE CTK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020597645.1	1e-42	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	5e-07	FAR1 family protein