PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29826
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 250aa    MW: 28494.3 Da    PI: 9.7247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29826genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171762147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W+tIa++++ gR++k+c++rw++ 
       PEQU_29826 17 RGHWRPGEDEKLRQLVEEFGPQNWNTIAEKLQ-GRSGKSCRLRWFNQ 62
                     899*****************************.***********996 PP
2Myb_DNA-binding59.76.2e-1969112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
       PEQU_29826  69 RRPFTEEEEERLLAAHRIHGNK-WAMIARLFP-GRTDNAVKNHWHV 112
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9781263IPR017930Myb domain
SuperFamilySSF466891.39E-2916110IPR009057Homeodomain-like
SMARTSM007171.1E-131665IPR001005SANT/Myb domain
PfamPF002491.0E-161762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-271870IPR009057Homeodomain-like
CDDcd001673.45E-122061No hitNo description
PROSITE profilePS5129427.66364118IPR017930Myb domain
SMARTSM007179.9E-1668116IPR001005SANT/Myb domain
PfamPF002493.8E-1569111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2171116IPR009057Homeodomain-like
CDDcd001677.88E-780111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENLDAVKPE EMKACPRGHW RPGEDEKLRQ LVEEFGPQNW NTIAEKLQGR SGKSCRLRWF  60
NQLDPRINRR PFTEEEEERL LAAHRIHGNK WAMIARLFPG RTDNAVKNHW HVIMARRQRE  120
KSKFLCKNNS SSETWPPAFS NFSLTSERRI KYGILESTHY IKMPFLSFCN AYRACSISGG  180
FGGGSGSENG SGIMRSMNDV LRIGCGSKKA IFSVSNGRGG VQFPEKSNDE GSFRREDVPY  240
IDFLGVGKDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31171177107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575382.10.0transcriptional activator Myb-like
SwissprotQ9SEZ42e-64MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2I0XB601e-124A0A2I0XB60_9ASPA; Transcription factor MYB44
STRINGXP_008810902.16e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.17e-64myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]