PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_30122

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 177aa MW: 20369 Da PI: 9.1473

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_30122	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.8e-18	33	117	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGF+vrk+++++ ++++ + +++ C k g+++e +++ + ++a trt+Ck +++ + + +++w v+k+ ++H H+la PEQU_30122 33 YRAYAHHVGFTVRKNNTTNWPNSKKLKVKDYICGKTGYKKEPNNT---VKLRKADTRTDCKIMVRFHVDFESNWTVAKFIENHIHPLA 117 9*************************************99888...7788999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-16	33	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MQSSEATHVC NDPIAENFLS SIIHNEKEAY ESYRAYAHHV GFTVRKNNTT NWPNSKKLKV 60 KDYICGKTGY KKEPNNTVKL RKADTRTDCK IMVRFHVDFE SNWTVAKFIE NHIHPLAKSG 120 DKHLLRSSRR MSELNADLLR SMTDSEIKAT HAYNFIATEV GGVENLECTK RDAFNFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574582.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020592540.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VPA5	2e-50	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-12	FAR1-related sequence 5