PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_30265

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 305aa MW: 35924.2 Da PI: 9.0653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_30265	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	33	116	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+++GF+v k+++ + ++++ + +++ C k g+++e +++ + +++ rtgCka+++ + + +g+w v+k+ ++HnH+la PEQU_30265 33 YRAYAHHIGFTVWKDHTIYWPNSKKLKVKDYICGKAGYKKEPNQN----KFKKVDARTGCKAMVRFHVDFEGNWTVAKFIEKHNHPLA 116 9************************************998877....9999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-17	33	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MQSCEATHVC NDPIAKKFLC NIIHNEEKTY ESYRAYAHHI GFTVWKDHTI YWPNSKKLKV 60 KDYICGKAGY KKEPNQNKFK KVDARTGCKA MVRFHVDFEG NWTVAKFIEK HNHPLAKSGD 120 KHLLRSSRRI RIIVTHAYNF IPTEVGGVEN LECTKRDAFN FIQRERRQRI EQGDVNALIQ 180 LFMERKTRDS MFAWDFQTDE SGRLTSIFCS DKLCRLDYDY FRDVIIFYTS YRLNKYNLCC 240 APFVGVNSTS SHCRILPQTH HRLCQWQIYK KLSSKVHCGV RTKSVCGLFY KCLSKCDSEE 300 EFEET

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574582.1	1e-174	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020592540.1	1e-173	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VFB6	1e-99	A0A2I0VFB6_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-22	FAR1-related sequence 5