PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_30270

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YC

Protein Properties

Length: 152aa MW: 16686.2 Da PI: 7.2677

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_30270	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.3	4.1e-19	31	112	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdivpr 98 ++P r+k+i++ d d++++s+ea ++s elfi l+ rsw+ a e++r+t+k d+ +a++ ++ + dfl d p+ PEQU_30270 31 TPSFPTGRVKRIMRLDADINKVSSEAVLMISLCSELFIEFLAERSWNAAAEKRRKTIKLEDLRKAIKgHSPTADFLFDCLPK 112 5689************************************************************846889****9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.09E-20	32	125	IPR009072	Histone-fold
Pfam	PF00808	2.3E-19	33	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.4E-21	34	112	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MAAVGELIPA NQSLSDAEDN GEPEPVAGVL TPSFPTGRVK RIMRLDADIN KVSSEAVLMI 60 SLCSELFIEF LAERSWNAAA EKRRKTIKLE DLRKAIKGHS PTADFLFDCL PKISKLPTPQ 120 TVKRSDPEKP LPAGVRRIDA FFSSKTPEEI AP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020581843.1	1e-106	nuclear transcription factor Y subunit C-9
TrEMBL	A0A2I0VRN2	1e-61	A0A2I0VRN2_9ASPA; Nuclear transcription factor Y subunit C-3
STRING	evm.model.supercontig_43.48	8e-38	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-37	nuclear factor Y, subunit C13