PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30334
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 95aa    MW: 10927.6 Da    PI: 9.9648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30334genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-095192245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       ++++E  l+ +  k+ G + W++Ia +++ gRt++++  +w 
       PEQU_30334 51 PEFSEQEVNLISRMYKLVGER-WSLIAGRIP-GRTAEEIEKYWK 92
                     679****************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5154595IPR017930Myb domain
SuperFamilySSF466893.9E-84993IPR009057Homeodomain-like
SMARTSM007171.8E-44995IPR001005SANT/Myb domain
PfamPF002492.9E-85192IPR001005SANT/Myb domain
CDDcd001671.26E-75292No hitNo description
Gene3DG3DSA:1.10.10.603.9E-125393IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:1900033Biological Processnegative regulation of trichome patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MLEGLFLVYS FTPSYTSPCK QHGSKRTAPF KMSDPKLLGH AKEKNSQCSK PEFSEQEVNL  60
ISRMYKLVGE RWSLIAGRIP GRTAEEIEKY WKSKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028556269.19e-26MYB-like transcription factor ETC1
TrEMBLA0A2I0VQ322e-24A0A2I0VQ32_9ASPA; Transcription factor CPC
STRINGXP_008806409.16e-22(Phoenix dactylifera)
STRINGGSMUA_Achr10P09220_0017e-22(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.13e-19MYB_related family protein